Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
1jmh | UMP | Thymidylate synthase |
PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
---|---|---|---|---|---|
1jmh | UMP | Thymidylate synthase | / | 1.000 | |
1tsv | UMP | Thymidylate synthase | / | 0.572 | |
1jmf | UMP | Thymidylate synthase | / | 0.561 | |
1thy | UMP | Thymidylate synthase | / | 0.560 | |
2g8a | UMP | Thymidylate synthase | / | 0.542 | |
1njb | UMP | Thymidylate synthase | / | 0.537 | |
1tsl | A15 | Thymidylate synthase | / | 0.520 | |
1njd | UMP | Thymidylate synthase | / | 0.518 | |
1jmg | UMP | Thymidylate synthase | / | 0.517 | |
1vzd | CB3 | Thymidylate synthase | / | 0.515 | |
1bp6 | UMP | Thymidylate synthase | / | 0.513 | |
1nja | DCM | Thymidylate synthase | / | 0.506 | |
1jmi | UMP | Thymidylate synthase | / | 0.505 | |
2g86 | UMP | Thymidylate synthase | / | 0.503 | |
2g89 | UMP | Thymidylate synthase | / | 0.494 | |
1tsy | UMP | Thymidylate synthase | / | 0.491 | |
2tdm | UMP | Thymidylate synthase | / | 0.491 | |
2vet | UMP | Thymidylate synthase | / | 0.488 | |
1bid | UMP | Thymidylate synthase | / | 0.480 | |
1bp0 | UMP | Thymidylate synthase | / | 0.480 | |
1nje | DCM | Thymidylate synthase | / | 0.480 | |
1aob | DDU | Thymidylate synthase | / | 0.468 | |
2g8d | UMP | Thymidylate synthase | / | 0.465 | |
1bpj | UMP | Thymidylate synthase | / | 0.462 | |
1njc | DCM | Thymidylate synthase | / | 0.459 | |
1f4e | TPR | Thymidylate synthase | / | 0.458 | |
1bdu | DUR | Thymidylate synthase | / | 0.456 | |
1lcb | TMP | Thymidylate synthase | / | 0.454 | |
1vza | UMP | Thymidylate synthase | / | 0.453 | |
1vzb | UMP | Thymidylate synthase | / | 0.453 | |
3bgx | TMP | Thymidylate synthase | / | 0.450 | |
1lcb | DHF | Thymidylate synthase | / | 0.447 | |
1tsx | UMP | Thymidylate synthase | / | 0.444 |