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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1j9zFADNADPH--cytochrome P450 reductase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1j9zFADNADPH--cytochrome P450 reductase/1.000
3ojxFADNADPH--cytochrome P450 reductase/0.517
1amoFADNADPH--cytochrome P450 reductase/0.516
1ja1FADNADPH--cytochrome P450 reductase/0.503
3qfsFADNADPH--cytochrome P450 reductase/0.484
1i7pFADNADH-cytochrome b5 reductase 31.6.2.20.475
1x1bSAHC-20 methyltransferase/0.474
4af7FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.474
1tllFADNitric oxide synthase, brain1.14.13.390.473
4yaoFADNADPH--cytochrome P450 reductase/0.467
1a8pFADFerredoxin--NADP reductase/0.466
3qfcFADNADPH--cytochrome P450 reductase/0.465
3mhpFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.463
3fpkFADFerredoxin-NADP reductase/0.460
3w5uFADFerredoxin/0.458
4fk8FADFerredoxin--NADP reductase/0.458
1f20FADNitric oxide synthase, brain1.14.13.390.455
2cy0NAPShikimate dehydrogenase (NADP(+))/0.455
1gaqFADFerredoxin/0.454
4m83ERYOleandomycin glycosyltransferase2.4.10.454
2vbdV10Isopenicillin N synthase1.21.3.10.453
3p62FMNPentaerythritol tetranitrate reductase/0.453
1cnfFADNitrate reductase [NADH]1.7.1.10.452
1gawFADFerredoxin/0.450
1fnbFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.448
4uajFADNa(+)-translocating NADH-quinone reductase subunit F/0.446
1qoqIGPTryptophan synthase alpha chain/0.445
4c43FADFerredoxin--NADP reductase1.18.1.20.445
4nbtNAD3-oxoacyl-[acyl-carrier-protein] reductase/0.444
1nvtNAPShikimate dehydrogenase (NADP(+))/0.443
2ejvNADL-threonine 3-dehydrogenase/0.442
2g8yNADHydroxycarboxylate dehydrogenase B/0.442
4e2dFMNDehydrogenase/0.442
3qftFADNADPH--cytochrome P450 reductase/0.441
1ndhFADNADH-cytochrome b5 reductase 31.6.2.20.440