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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1hdzNADAlcohol dehydrogenase 1B1.1.1.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1hdzNADAlcohol dehydrogenase 1B1.1.1.11.000
1a71NADAlcohol dehydrogenase E chain1.1.1.10.555
1mgoNADAlcohol dehydrogenase E chain1.1.1.10.553
1hszNADAlcohol dehydrogenase 1B1.1.1.10.549
1axeNADAlcohol dehydrogenase E chain1.1.1.10.543
2ohxNADAlcohol dehydrogenase E chain1.1.1.10.533
1adcPADAlcohol dehydrogenase E chain1.1.1.10.523
5cdsNAJAlcohol dehydrogenase E chain1.1.1.10.518
2oxiNADAlcohol dehydrogenase E chain1.1.1.10.513
2jhfNADAlcohol dehydrogenase E chain1.1.1.10.501
1axgNADAlcohol dehydrogenase E chain1.1.1.10.489
1adbCNDAlcohol dehydrogenase E chain1.1.1.10.481
1p0fNAPNADP-dependent alcohol dehydrogenase1.1.1.20.455
3ukoNADAlcohol dehydrogenase class-3/0.454