Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
1gm8 | SOX | Penicillin G acylase | 3.5.1.11 |
PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
---|---|---|---|---|---|
1gm8 | SOX | Penicillin G acylase | 3.5.1.11 | 1.000 | |
1fxv | PNN | Penicillin G acylase | 3.5.1.11 | 0.594 | |
3nub | UD0 | UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase | 2.6.1.98 | 0.465 | |
2xvi | FAD | Putative flavin-containing monooxygenase | / | 0.447 | |
3zku | HCV | Isopenicillin N synthase | 1.21.3.1 | 0.444 | |
4gtr | 7TR | Protein farnesyltransferase subunit beta | 2.5.1.58 | 0.443 | |
1po7 | TZD | Benzoylformate decarboxylase | 4.1.1.7 | 0.440 |