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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1gm8SOXPenicillin G acylase3.5.1.11

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity
Align
1gm8SOXPenicillin G acylase3.5.1.111.000
1fxvPNNPenicillin G acylase3.5.1.110.594
3nubUD0UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase2.6.1.980.465
2xviFADPutative flavin-containing monooxygenase/0.447
3zkuHCVIsopenicillin N synthase1.21.3.10.444
4gtr7TRProtein farnesyltransferase subunit beta2.5.1.580.443
1po7TZDBenzoylformate decarboxylase4.1.1.70.440