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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1fkoEFZGag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1fkoEFZGag-Pol polyprotein2.7.7.491.000
3lalKRVGag-Pol polyprotein2.7.7.490.504
1c1bGCAGag-Pol polyprotein2.7.7.490.501
4rw6494Gag-Pol polyprotein2.7.7.490.494
3i0rRT3Gag-Pol polyprotein2.7.7.490.492
1tl1H18Gag-Pol polyprotein2.7.7.490.491
1rt5UC2Gag-Pol polyprotein2.7.7.490.489
4h4m494Gag-Pol polyprotein2.7.7.490.485
2jleI15Reverse transcriptase/RNaseH/0.484
1tktH12Gag-Pol polyprotein2.7.7.490.480
1vruAAPGag-Pol polyprotein2.7.7.490.476
2wonZZEGag-Pol polyprotein2.7.7.490.476
3c6uM22Gag-Pol polyprotein2.7.7.490.475
1tl3H20Gag-Pol polyprotein2.7.7.490.474
4i7fNVEGag-Pol polyprotein2.7.7.490.474
3is9AC7Gag-Pol polyprotein2.7.7.490.473
3t1a5MAGag-Pol polyprotein2.7.7.490.471
1tkzH16Gag-Pol polyprotein2.7.7.490.469
3dmjGWEPol protein/0.466
3i0sRT7Gag-Pol polyprotein2.7.7.490.466
3ffi3OBGag-Pol polyprotein2.7.7.490.464
1ikvEFZGag-Pol polyprotein2.7.7.490.463
1hnvTBOGag-Pol polyprotein2.7.7.490.461
2ze2T27Gag-Pol polyprotein2.7.7.490.461
1qxlFR8Adenosine deaminase3.5.4.40.455
4bj9UHBTankyrase-22.4.2.300.455
4lsl1YQGag-Pol polyprotein2.7.7.490.455
4ea30NNNociceptin receptor/0.453
1ikyMSDGag-Pol polyprotein2.7.7.490.451
2p1v5TNRetinoic acid receptor RXR-alpha/0.451
3dlgGWEGag-Pol polyprotein2.7.7.490.451
3dyaPZLGag-Pol polyprotein2.7.7.490.450
1c1c612Gag-Pol polyprotein2.7.7.490.449
1ikwEFZGag-Pol polyprotein2.7.7.490.449
1s1wUC1Gag-Pol polyprotein2.7.7.490.449
1ikxPNUGag-Pol polyprotein2.7.7.490.448
3bgrT27Gag-Pol polyprotein2.7.7.490.448
2vg7NNIGag-Pol polyprotein2.7.7.490.447
2p1u4TNRetinoic acid receptor RXR-alpha/0.446
1hniAAAGag-Pol polyprotein2.7.7.490.443
3dokGWJPol protein/0.443
3med65BGag-Pol polyprotein2.7.7.490.443
4i2q1BTGag-Pol polyprotein2.7.7.490.442
1hpzAAPGag-Pol polyprotein2.7.7.490.441
2zd1T27Gag-Pol polyprotein2.7.7.490.441
3upkUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.441