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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1fk9EFZGag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1fk9EFZGag-Pol polyprotein2.7.7.491.000
4i7fNVEGag-Pol polyprotein2.7.7.490.558
2hnzPC0Gag-Pol polyprotein2.7.7.490.555
1c1bGCAGag-Pol polyprotein2.7.7.490.550
1rt2TNKGag-Pol polyprotein2.7.7.490.524
2hndNVPGag-Pol polyprotein2.7.7.490.521
3ffi3OBGag-Pol polyprotein2.7.7.490.514
3i0rRT3Gag-Pol polyprotein2.7.7.490.503
1s9eADBGag-Pol polyprotein2.7.7.490.499
1jlcFTCGag-Pol polyprotein2.7.7.490.475
1tl1H18Gag-Pol polyprotein2.7.7.490.475
1tl3H20Gag-Pol polyprotein2.7.7.490.475
2vg7NNIGag-Pol polyprotein2.7.7.490.472
1ikwEFZGag-Pol polyprotein2.7.7.490.470
1klmSPPGag-Pol polyprotein2.7.7.490.467
3megT27Gag-Pol polyprotein2.7.7.490.467
2rf2MRXGag-Pol polyprotein2.7.7.490.463
1tkzH16Gag-Pol polyprotein2.7.7.490.460
3meeT27Gag-Pol polyprotein2.7.7.490.458
3qlhT27Gag-Pol polyprotein2.7.7.490.457
1tktH12Gag-Pol polyprotein2.7.7.490.456
1ikvEFZGag-Pol polyprotein2.7.7.490.455
2vg5NNCGag-Pol polyprotein2.7.7.490.449
1hnvTBOGag-Pol polyprotein2.7.7.490.448
1ep4S11Gag-Pol polyprotein2.7.7.490.444
1revTB9Gag-Pol polyprotein2.7.7.490.444
1ikxPNUGag-Pol polyprotein2.7.7.490.442