sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1esq | TZP | Hydroxyethylthiazole kinase |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 1esq | TZP | Hydroxyethylthiazole kinase | / | 1.000 | |
| 1nzf | UPG | DNA beta-glucosyltransferase | / | 0.483 | |
| 3nl6 | ACP | Uncharacterized protein | / | 0.482 | |
| 1k6t | XN1 | Gag-Pol polyprotein | 3.4.23.16 | 0.480 | |
| 1k6c | MK1 | Gag-Pol polyprotein | 3.4.23.16 | 0.479 | |
| 3e8e | G98 | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.469 | |
| 4o0r | X4Z | Serine/threonine-protein kinase PAK 1 | 2.7.11.1 | 0.465 | |
| 2oh0 | 2PY | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.464 | |
| 4h1e | 10J | Beta-secretase 1 | 3.4.23.46 | 0.463 | |
| 3dxm | N24 | Actin-related protein 3 | / | 0.460 | |
| 1o9b | NAI | Quinate/shikimate dehydrogenase | / | 0.459 | |
| 1loo | GTP | Adenylosuccinate synthetase isozyme 1 | / | 0.458 | |
| 3u9e | COA | Lmo1369 protein | / | 0.458 | |
| 1k6p | XN3 | Gag-Pol polyprotein | 3.4.23.16 | 0.457 | |
| 1gth | FAD | Dihydropyrimidine dehydrogenase [NADP(+)] | 1.3.1.2 | 0.455 | |
| 1k6v | XN2 | Gag-Pol polyprotein | 3.4.23.16 | 0.454 | |
| 4a6b | QG8 | Gag-Pol polyprotein | 3.4.23.16 | 0.453 | |
| 4dfg | 0JV | Gag-Pol polyprotein | 3.4.23.16 | 0.452 | |
| 2fzn | FAD | Bifunctional protein PutA | 1.5.5.2 | 0.450 | |
| 2xck | MH4 | 3-phosphoinositide-dependent protein kinase 1 | 2.7.11.1 | 0.450 | |
| 2a1y | 5GP | GMP reductase | / | 0.448 | |
| 2pwc | G3G | Gag-Pol polyprotein | 3.4.23.16 | 0.446 | |
| 3g5s | FAD | Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO | / | 0.445 | |
| 2qnq | QN3 | Gag-Pol polyprotein | 3.4.23.16 | 0.444 | |
| 3ule | C69 | Actin-related protein 3 | / | 0.444 | |
| 4j1t | NAD | NAD/NADP transhydrogenase alpha subunit 1 | / | 0.443 | |
| 3dnd | LL2 | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.441 | |
| 4a6c | QG9 | Gag-Pol polyprotein | 3.4.23.16 | 0.441 | |
| 4gb9 | 0WR | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform | 2.7.1.153 | 0.441 | |
| 3bto | SSB | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.440 |