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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1aq1STUCyclin-dependent kinase 22.7.11.22

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1aq1STUCyclin-dependent kinase 22.7.11.221.000
3le62BZCyclin-dependent kinase 22.7.11.220.563
3lfqA28Cyclin-dependent kinase 22.7.11.220.515
2uznC96Cyclin-dependent kinase 22.7.11.220.489
1oirHDYCyclin-dependent kinase 22.7.11.220.484
4erwSTUCyclin-dependent kinase 22.7.11.220.479
1gih1PUCyclin-dependent kinase 22.7.11.220.459
2bheBRYCyclin-dependent kinase 22.7.11.220.451
2w05FRTCyclin-dependent kinase 22.7.11.220.451
3lfnA27Cyclin-dependent kinase 22.7.11.220.447
4ek816KCyclin-dependent kinase 22.7.11.220.445
4fkv61KCyclin-dependent kinase 22.7.11.220.445
3r9dX6BCyclin-dependent kinase 22.7.11.220.442
3uli1N3Cyclin-dependent kinase 22.7.11.220.441
4ek610KCyclin-dependent kinase 22.7.11.220.441
3rk708ZCyclin-dependent kinase 22.7.11.220.440