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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1a8rGTPGTP cyclohydrolase 13.5.4.16

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1a8rGTPGTP cyclohydrolase 13.5.4.161.000
1n3rGTPGTP cyclohydrolase 13.5.4.160.578
1a9cGTPGTP cyclohydrolase 13.5.4.160.512
1c9k5GPBifunctional adenosylcobalamin biosynthesis protein CobU/0.463
3k5c0BIBeta-secretase 13.4.23.460.460
3aezGDPPantothenate kinase2.7.1.330.454
2a92NAIL-lactate dehydrogenase/0.451
2g8yNADHydroxycarboxylate dehydrogenase B/0.451
2oapANPType II secretion system protein (GspE-2)/0.451
4du6GTPGTP cyclohydrolase 1/0.451
5hwsNAP2-dehydropantoate 2-reductase/0.451
1ja0NAPNADPH--cytochrome P450 reductase/0.450
3owaFADAcyl-CoA dehydrogenase/0.450
3hatGLY_VAL_ARG_RNGProthrombin3.4.21.50.448
3p62FMNPentaerythritol tetranitrate reductase/0.448
1xddAAYIntegrin alpha-L/0.447
1lbcCYZGlutamate receptor 2/0.446
2a94AP0L-lactate dehydrogenase1.1.1.270.446
4bfxZVXPantothenate kinase2.7.1.330.446
4dptAGSMevalonate diphosphate decarboxylase/0.446
4rquNADAlcohol dehydrogenase class-P/0.446
4s0vSUVOrexin receptor type 2/0.446
1l8qADPChromosomal replication initiator protein DnaA/0.445
3ai3NDPNADPH-sorbose reductase/0.445
3uoyFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.445
5dp2NAPCurF/0.444
1t4u81AProthrombin3.4.21.50.443
2zsbADPPantothenate kinase2.7.1.330.443
2cv2GSUGlutamate--tRNA ligase6.1.1.170.442