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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
5tgzFMNCannabinoid receptor 1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
5tgzFMNCannabinoid receptor 1/1.000
1fx1FMNFlavodoxin/0.557
3f6sFMNFlavodoxin/0.550
1c7fFMNFlavodoxin/0.549
3f90FMNFlavodoxin/0.549
2fx2FMNFlavodoxin/0.547
3f6rFMNFlavodoxin/0.544
1j9gFMNFlavodoxin/0.540
1bu5RBFFlavodoxin/0.528
5fx2FMNFlavodoxin/0.514
4fx2FMNFlavodoxin/0.513
1azlFMNFlavodoxin/0.509
1akwFMNFlavodoxin/0.505
1j8qFMNFlavodoxin/0.499
1xyyFMNFlavodoxin/0.498
1wsbFMNFlavodoxin/0.495
1akuFMNFlavodoxin/0.494
4y7cFMNNADPH--cytochrome P450 reductase/0.489
1j9zFMNNADPH--cytochrome P450 reductase/0.487
3ojxFMNNADPH--cytochrome P450 reductase/0.481
1xyvFMNFlavodoxin/0.478
5xraFMNCannabinoid receptor 1/0.473
1akrFMNFlavodoxin/0.467
2bf4FMNNADPH--cytochrome P450 reductase/0.461
1ja1FMNNADPH--cytochrome P450 reductase/0.457
3uzwNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.456
3kapFMNFlavodoxin/0.454
3c1kT15Prothrombin3.4.21.50.453
5xr8FMNCannabinoid receptor 1/0.452
4n82FMNRibonucleotide reductase (NrdI family protein), putative/0.451
3n3aFMNProtein NrdI/0.450
2bn4FMNNADPH--cytochrome P450 reductase/0.449
1d9i00PProthrombin3.4.21.50.447
2v13C40Renin3.4.23.150.446
4driRAPSerine/threonine-protein kinase mTOR2.7.11.10.446
4driRAPPeptidyl-prolyl cis-trans isomerase FKBP55.2.1.80.446
1ja0FMNNADPH--cytochrome P450 reductase/0.444
2po3T4K4-dehydrase/0.442
4uugPXGBranched-chain amino acid aminotransferase, putative/0.442
3fktSIIBeta-secretase 13.4.23.460.441
2aj4ANPGalactokinase2.7.1.60.440