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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
5djuFMNNPH1-2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
5djuFMNNPH1-2/1.000
5djtFMNNPH1-2/0.535
4hhdFMNPhototropin-12.7.11.10.483
4eerFMNPhototropin-22.7.11.10.472
2v1aFMNNPH1-1/0.469
2pd7FADVivid PAS protein VVD/0.468
4eeuFMNPhototropin-22.7.11.10.467
1n9lFMNPutative blue light receptor/0.465
3hjiFADVivid PAS protein VVD/0.465
4wujFMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy/0.464
4eetFMNPhototropin-22.7.11.10.463
3ue6FMNAureochrome1/0.461
5dkkFMNPredicted protein/0.458
2pr5FMNBlue-light photoreceptor/0.455
2pdtFADVivid PAS protein VVD/0.449
1n9nFMNPutative blue light receptor/0.448
2v0uFMNNPH1-1/0.447
2pd8FADVivid PAS protein VVD/0.446
3hjkFADVivid PAS protein VVD/0.445
3d72FADVivid PAS protein VVD/0.444
3p7nFMNLight-activated DNA-binding protein EL222/0.440