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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
5br7FADUDP-galactopyranose mutase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
5br7FADUDP-galactopyranose mutase/1.000
3hdyFDAUDP-galactopyranose mutase/0.509
1v0jFADUDP-galactopyranose mutase5.4.99.90.506
3intFDAUDP-galactopyranose mutase5.4.99.90.492
3hdyFADUDP-galactopyranose mutase/0.491
4rpgFADUDP-galactopyranose mutase5.4.99.90.490
4rphFADUDP-galactopyranose mutase5.4.99.90.488
4mo2FDAUDP-galactopyranose mutase/0.481
3mj4FADUDP-galactopyranose mutase/0.477
2bi7FADUDP-galactopyranose mutase5.4.99.90.467
3he3FADUDP-galactopyranose mutase/0.465
3kybFADUDP-galactopyranose mutase5.4.99.90.459
1wamFADUDP-galactopyranose mutase5.4.99.90.458
2bi8FADUDP-galactopyranose mutase5.4.99.90.456
4rpjFADUDP-galactopyranose mutase5.4.99.90.452
1i8tFADUDP-galactopyranose mutase5.4.99.90.446
2b9wFADPutative aminooxidase/0.445