Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4yv1S4MSpermidine synthase, putative

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4yv1S4MSpermidine synthase, putative/1.000
4yuzS4MSpermidine synthase, putative/0.676
4yv0S4MSpermidine synthase, putative/0.584
2o07MTASpermidine synthase2.5.1.160.527
4yv2S4MSpermidine synthase, putative/0.491
4yuvS4MSpermidine synthase, putative/0.473
1jq3AATPolyamine aminopropyltransferase/0.464
4n6bCOAUncharacterized protein/0.454
2ywlFADThioredoxin reductase related protein/0.453
4yaiNAIC alpha-dehydrogenase/0.453
5jjrSAHGenome polyprotein/0.453
2ixaNADAlpha-N-acetylgalactosaminidase3.2.1.490.448
4k6mSAHGenome polyprotein/0.447
1tj0FADBifunctional protein PutA1.5.5.20.445
3pb3SAH16S rRNA (adenine(1408)-N(1))-methyltransferase2.1.1.1800.445
3toh079Gag-Pol polyprotein2.7.7.490.445
2o06MTASpermidine synthase2.5.1.160.444
4opgFDAConserved Archaeal protein/0.442
1yb5NAPQuinone oxidoreductase1.6.5.50.441
2pt6S4MSpermidine synthase/0.441
3dgaNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.441
1fm4DXCMajor pollen allergen Bet v 1-L/0.440
1ke9LS5Cyclin-dependent kinase 22.7.11.220.440
2ym2FADPhenylacetone monooxygenase1.14.13.920.440
5ijzNAPNADP-specific glutamate dehydrogenase1.4.1.40.440