Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4y6uUPGGlucosyl-3-phosphoglycerate synthase2.4.1.266

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4y6uUPGGlucosyl-3-phosphoglycerate synthase2.4.1.2661.000
4y9xUPGGlucosyl-3-phosphoglycerate synthase2.4.1.2660.653
4y6nUPGGlucosyl-3-phosphoglycerate synthase2.4.1.2660.640
3ckqUPGGlucosyl-3-phosphoglycerate synthase2.4.1.2660.485
3o3pGDDGlycosyl transferase, family 2/0.476
2zu9GDPMannosyl-3-phosphoglycerate synthase2.4.1.2170.470
2y4lGDPUncharacterized protein/0.448
2bo8GDXMannosylglycerate synthase/0.447