sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4xum | IMN | Peroxisome proliferator-activated receptor gamma |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 4xum | IMN | Peroxisome proliferator-activated receptor gamma | / | 1.000 | |
| 4xuh | SFI | Peroxisome proliferator-activated receptor gamma | / | 0.607 | |
| 2f4b | EHA | Peroxisome proliferator-activated receptor gamma | / | 0.585 | |
| 4hee | 14R | Peroxisome proliferator-activated receptor gamma | / | 0.583 | |
| 2pob | GW4 | Peroxisome proliferator-activated receptor gamma | / | 0.574 | |
| 2q61 | SF1 | Peroxisome proliferator-activated receptor gamma | / | 0.573 | |
| 2gtk | 208 | Peroxisome proliferator-activated receptor gamma | / | 0.570 | |
| 2zno | S44 | Peroxisome proliferator-activated receptor gamma | / | 0.570 | |
| 1knu | YPA | Peroxisome proliferator-activated receptor gamma | / | 0.569 | |
| 2hwr | DRD | Peroxisome proliferator-activated receptor gamma | / | 0.556 | |
| 1i7i | AZ2 | Peroxisome proliferator-activated receptor gamma | / | 0.555 | |
| 2ath | 3EA | Peroxisome proliferator-activated receptor gamma | / | 0.552 | |
| 4xld | BRL | Peroxisome proliferator-activated receptor gamma | / | 0.546 | |
| 2q8s | L92 | Peroxisome proliferator-activated receptor gamma | / | 0.536 | |
| 2q5p | 241 | Peroxisome proliferator-activated receptor gamma | / | 0.531 | |
| 1zgy | BRL | Peroxisome proliferator-activated receptor gamma | / | 0.525 | |
| 3vsp | EK8 | Peroxisome proliferator-activated receptor gamma | / | 0.519 | |
| 1fm6 | BRL | Peroxisome proliferator-activated receptor gamma | / | 0.518 | |
| 1fm9 | 570 | Peroxisome proliferator-activated receptor gamma | / | 0.516 | |
| 3cs8 | BRL | Peroxisome proliferator-activated receptor gamma | / | 0.516 | |
| 4em9 | TCE | Peroxisome proliferator-activated receptor gamma | / | 0.514 | |
| 4jaz | STL | Peroxisome proliferator-activated receptor gamma | / | 0.512 | |
| 4oj4 | DIF | Peroxisome proliferator-activated receptor gamma | / | 0.512 | |
| 3h0a | D30 | Peroxisome proliferator-activated receptor gamma | / | 0.510 | |
| 4f9m | FCM | Peroxisome proliferator-activated receptor gamma | / | 0.509 | |
| 4a4w | YFB | Peroxisome proliferator-activated receptor gamma | / | 0.505 | |
| 4a4v | YFD | Peroxisome proliferator-activated receptor gamma | / | 0.502 | |
| 2hfp | NSI | Peroxisome proliferator-activated receptor gamma | / | 0.498 | |
| 2q6s | PLB | Peroxisome proliferator-activated receptor gamma | / | 0.492 | |
| 1rdt | 570 | Peroxisome proliferator-activated receptor gamma | / | 0.490 | |
| 3vjh | J35 | Peroxisome proliferator-activated receptor gamma | / | 0.490 | |
| 1i7g | AZ2 | Peroxisome proliferator-activated receptor alpha | / | 0.485 | |
| 1k74 | 544 | Peroxisome proliferator-activated receptor gamma | / | 0.484 | |
| 2znn | S44 | Peroxisome proliferator-activated receptor alpha | / | 0.481 | |
| 4e4q | RRH | Peroxisome proliferator-activated receptor gamma | / | 0.476 | |
| 3vso | EK1 | Peroxisome proliferator-activated receptor gamma | / | 0.474 | |
| 1xdd | AAY | Integrin alpha-L | / | 0.472 | |
| 3v9v | 21L | Peroxisome proliferator-activated receptor gamma | / | 0.468 | |
| 2q5g | 1FA | Peroxisome proliferator-activated receptor delta | / | 0.467 | |
| 2yfe | YFE | Peroxisome proliferator-activated receptor gamma | / | 0.464 | |
| 2npa | MMB | Peroxisome proliferator-activated receptor alpha | / | 0.461 | |
| 3sz0 | FAD | Sulfide-quinone reductase | / | 0.459 | |
| 3sp6 | IL2 | Peroxisome proliferator-activated receptor alpha | / | 0.457 | |
| 3t2z | FAD | Sulfide-quinone reductase | / | 0.456 | |
| 4aw3 | MYV | Mycinamicin IV hydroxylase/epoxidase | / | 0.455 | |
| 3t2y | FAD | Sulfide-quinone reductase | / | 0.453 | |
| 2y46 | MIV | Mycinamicin IV hydroxylase/epoxidase | / | 0.452 | |
| 3jyn | NDP | Quinone oxidoreductase | / | 0.450 | |
| 1kkq | 471 | Peroxisome proliferator-activated receptor alpha | / | 0.449 | |
| 1pnv | TYD | dTDP-epi-vancosaminyltransferase | 2.4.1.311 | 0.448 | |
| 1xuo | LA1 | Integrin alpha-L | / | 0.448 | |
| 3kpk | FAD | Sulfide-quinone reductase | / | 0.448 | |
| 4g7g | VFV | Lanosterol 14-alpha-demethylase | / | 0.446 | |
| 3t14 | FAD | Sulfide-quinone reductase | / | 0.444 | |
| 3syi | FAD | Sulfide-quinone reductase | / | 0.443 | |
| 1k7l | 544 | Peroxisome proliferator-activated receptor alpha | / | 0.442 | |
| 2chz | 093 | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform | 2.7.1.153 | 0.442 | |
| 4b7x | NAP | Probable oxidoreductase | / | 0.442 | |
| 4q73 | FAD | Bifunctional protein PutA | / | 0.441 | |
| 1xe5 | 5FE | Plasmepsin-2 | 3.4.23.39 | 0.440 | |
| 1zeo | C01 | Peroxisome proliferator-activated receptor gamma | / | 0.440 | |
| 2xc3 | RT8 | Steroid C26-monooxygenase | 1.14.13.141 | 0.440 | |
| 3nbv | ANP | Ketohexokinase | / | 0.440 |