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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4wzhFMNDihydroorotate dehydrogenase (fumarate)

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4wzhFMNDihydroorotate dehydrogenase (fumarate)/1.000
3gyeFMNDihydroorotate dehydrogenase (fumarate)/0.628
2djxFMNDihydroorotate dehydrogenase (fumarate)1.3.98.10.612
4ef8FMNDihydroorotate dehydrogenase (fumarate)/0.588
3oixFMNDihydroorotate dehydrogenase/0.576
4ef9FMNDihydroorotate dehydrogenase (fumarate)/0.567
2djlFMNDihydroorotate dehydrogenase (fumarate)1.3.98.10.563
3c3nFMNDihydroorotate dehydrogenase (fumarate)1.3.98.10.549
2bslFMNDihydroorotate dehydrogenase A (fumarate)1.3.98.10.529
1jueFMNDihydroorotate dehydrogenase A (fumarate)1.3.98.10.528
1dorFMNDihydroorotate dehydrogenase A (fumarate)1.3.98.10.512
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.444
1xe55FEPlasmepsin-23.4.23.390.441