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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4w5jAP5Adenylate kinase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4w5jAP5Adenylate kinase/1.000
3dl0AP5Adenylate kinase/0.578
4mkfAP5Adenylate kinase/0.557
4jloADPAdenylate kinase/0.547
2oo7AP5Adenylate kinase/0.546
4jldADPAdenylate kinase/0.524
4jl5ADPAdenylate kinase/0.517
4qbfAP5Adenylate kinase/0.515
3hpqAP5Adenylate kinase/0.502
1e4yAP5Adenylate kinase/0.497
4typAP5Adenylate kinase/0.494
1e4vAP5Adenylate kinase/0.493
4qbiAP5Adenylate kinase/0.488
1p3jAP5Adenylate kinase/0.485
4cf7ADPAdenylate kinase/0.485
4nu0AP5Adenylate kinase/0.483
4ikeADPAdenylate kinase/0.482
4jkyADPAdenylate kinase/0.482
2osbAP5Adenylate kinase/0.477
1dvrATFAdenylate kinase/0.476
4jl6ADPAdenylate kinase/0.475
3dkvAP5Adenylate kinase/0.470
3tlxADPAdenylate kinase 2/0.466
1akeAP5Adenylate kinase/0.447
1ankANPAdenylate kinase/0.440