Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4uohADPNucleoside diphosphate kinase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4uohADPNucleoside diphosphate kinase/1.000
1nueGDPNucleoside diphosphate kinase B2.7.4.60.534
4uofDATNucleoside diphosphate kinase/0.533
4uogYYYNucleoside diphosphate kinase/0.508
2hveADPNucleoside diphosphate kinase A2.7.4.60.497
4fkxCDPNucleoside diphosphate kinase/0.481
3q8uADPNucleoside diphosphate kinase/0.477
1zs6ADPNucleoside diphosphate kinase 32.7.4.60.473
1be4PCGNucleoside diphosphate kinase A 22.7.4.60.469
2hvdADPNucleoside diphosphate kinase A2.7.4.60.467
3bbfGDPNucleoside diphosphate kinase B2.7.4.60.467
3nguADPNucleoside diphosphate kinase/0.458
1wklATPNucleoside diphosphate kinase/0.455
1ndcTYDNucleoside diphosphate kinase, cytosolic2.7.4.60.452