sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4uj5 | GNP | Ras-related protein Rab-11A |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 1.000 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.606 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.522 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.519 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.499 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 0.489 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.483 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 0.481 | |
| 4c7k | NAP | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.481 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.468 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 0.466 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 0.465 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.464 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.460 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.457 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.455 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.454 | |
| 2x19 | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.453 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.452 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.451 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 0.450 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.448 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.447 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.446 | |
| 2cf6 | NAP | Cinnamyl alcohol dehydrogenase 5 | 1.1.1.195 | 0.445 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.443 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.443 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.442 | |
| 2dft | ADP | Shikimate kinase | 2.7.1.71 | 0.442 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 0.441 | |
| 2zat | NAP | Dehydrogenase/reductase SDR family member 4 | 1.1.1.184 | 0.440 |