Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4u7tSAHDNA (cytosine-5)-methyltransferase 3A2.1.1.37

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4u7tSAHDNA (cytosine-5)-methyltransferase 3A2.1.1.371.000
4h0nSAHDnmt2/0.521
3qv2SAH5-cytosine DNA methyltransferase/0.496
4onjSFGDNA methyltransferase/0.491
4wxxSAHDNA (cytosine-5)-methyltransferase 12.1.1.370.491
3pt9SAHDNA (cytosine-5)-methyltransferase 12.1.1.370.476
7mhtSAHModification methylase HhaI2.1.1.370.464
3swrSFGDNA (cytosine-5)-methyltransferase 12.1.1.370.461
4da4SAHDNA (cytosine-5)-methyltransferase 12.1.1.370.460
3pt6SAHDNA (cytosine-5)-methyltransferase 12.1.1.370.458
2yxlSFG450aa long hypothetical fmu protein/0.457
3ldfSAHUncharacterized protein/0.454
5e72SAMN2, N2-dimethylguanosine tRNA methyltransferase/0.454
8mhtSAHModification methylase HhaI2.1.1.370.451
1mhtSAHModification methylase HhaI2.1.1.370.448
4fzvSAM5-methylcytosine rRNA methyltransferase NSUN42.1.10.441