Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4rvdSAMD-mycarose 3-C-methyltransferase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4rvdSAMD-mycarose 3-C-methyltransferase/1.000
3p62FMNPentaerythritol tetranitrate reductase/0.463
4hmz18TdTDP-4-dehydro-6-deoxyglucose 3-epimerase5.1.3.270.462
3f03FMNPentaerythritol tetranitrate reductase/0.461
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.459
1h51FMNPentaerythritol tetranitrate reductase/0.452
1icsFMN12-oxophytodienoate reductase 11.3.1.420.450
2hs6FMN12-oxophytodienoate reductase 31.3.1.420.449
1bxkNADdTDP-glucose 4,6-dehydratase 2/0.446
2v58LZJBiotin carboxylase6.3.4.140.446
1h63FMNPentaerythritol tetranitrate reductase/0.444
1icpFMN12-oxophytodienoate reductase 11.3.1.420.444
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.444
2daaDCSD-alanine aminotransferase2.6.1.210.443
4jicFMNGTN Reductase/0.443
2w6oOA3Biotin carboxylase6.3.4.140.442
2abbFMNPentaerythritol tetranitrate reductase/0.441
3rtnRTNBeta-secretase 13.4.23.460.441