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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4qbiAP5Adenylate kinase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4qbiAP5Adenylate kinase/1.000
4jloADPAdenylate kinase/0.584
4qbhAP5Adenylate kinase/0.579
3dl0AP5Adenylate kinase/0.574
2eu8AP5Adenylate kinase/0.572
4jl6ADPAdenylate kinase/0.572
3hpqAP5Adenylate kinase/0.570
2oo7AP5Adenylate kinase/0.566
3dkvAP5Adenylate kinase/0.561
4jl5ADPAdenylate kinase/0.556
2osbAP5Adenylate kinase/0.549
4ikeADPAdenylate kinase/0.546
1ankANPAdenylate kinase/0.545
1akeAP5Adenylate kinase/0.541
4w5jAP5Adenylate kinase/0.541
4cf7ADPAdenylate kinase/0.536
4typAP5Adenylate kinase/0.535
4jkyADPAdenylate kinase/0.527
4nu0AP5Adenylate kinase/0.516
3tlxADPAdenylate kinase 2/0.514
4jldADPAdenylate kinase/0.512
4mkfAP5Adenylate kinase/0.511
1zioAP5Adenylate kinase/0.510
3hprAP5Adenylate kinase/0.505
1e4yAP5Adenylate kinase/0.503
1p3jAP5Adenylate kinase/0.502
2rgxAP5Adenylate kinase/0.471
4x8oAP5Adenylate kinase/0.470
1dvrATFAdenylate kinase/0.469
2eckADPAdenylate kinase/0.469
2ql6ADPNicotinamide riboside kinase 1/0.454
2akyAP5Adenylate kinase/0.453
4x8lAP5Adenylate kinase/0.453
4tyqAP5Adenylate kinase/0.446