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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4o7uTHFThymidylate synthase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4o7uTHFThymidylate synthase/1.000
3bgxMEFThymidylate synthase/0.593
1an5CB3Thymidylate synthase/0.568
4gevCB3Thymidylate synthase/0.563
3bhrTHGThymidylate synthase/0.555
3uwlFOZThymidylate synthase/0.555
1tduCB3Thymidylate synthase/0.552
3bhlTHGThymidylate synthase/0.540
1fwmCB3Thymidylate synthase/0.537
4ez8DHFThymidylate synthase2.1.1.450.536
1tysDHFThymidylate synthase/0.535
4fogC2FThymidylate synthase ThyA/0.533
2ftoCB3Thymidylate synthase/0.529
1f4fTP3Thymidylate synthase/0.523
4knzCB3Thymidylate synthase/0.516
1dduCB3Thymidylate synthase/0.515
4isk1JYThymidylate synthase/0.491
2vf0F89Thymidylate synthase/0.483
1f4gTP4Thymidylate synthase/0.476
1jtuLYBThymidylate synthase/0.451
1hvyD16Thymidylate synthase2.1.1.450.440