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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4o281QSNicotinamide phosphoribosyltransferase2.4.2.12

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4o281QSNicotinamide phosphoribosyltransferase2.4.2.121.000
4kfn1QRNicotinamide phosphoribosyltransferase2.4.2.120.738
4kfp1R7Nicotinamide phosphoribosyltransferase2.4.2.120.692
4kfo1QSNicotinamide phosphoribosyltransferase2.4.2.120.671
4ltsLTSNicotinamide phosphoribosyltransferase2.4.2.120.656
4jnm1LJNicotinamide phosphoribosyltransferase2.4.2.120.634
4jr51LSNicotinamide phosphoribosyltransferase2.4.2.120.620
4m6p20RNicotinamide phosphoribosyltransferase2.4.2.120.604
4lwwLWWNicotinamide phosphoribosyltransferase2.4.2.120.583
2gvjDGBNicotinamide phosphoribosyltransferase2.4.2.120.580
4lva20MNicotinamide phosphoribosyltransferase2.4.2.120.569
4o1dDGBNicotinamide phosphoribosyltransferase2.4.2.120.493
4lvb20NNicotinamide phosphoribosyltransferase2.4.2.120.456