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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4nmbFADBifunctional protein PutA

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4nmbFADBifunctional protein PutA/1.000
4nm9FADBifunctional protein PutA/0.593
4o8aFADBifunctional protein PutA1.2.1.880.586
2fznFADBifunctional protein PutA1.5.5.20.573
4q73FADBifunctional protein PutA/0.572
1tj0FADBifunctional protein PutA1.5.5.20.569
1tj2FADBifunctional protein PutA1.5.5.20.566
2fzmFADBifunctional protein PutA1.5.5.20.559
3e2sFADBifunctional protein PutA1.5.5.20.556
3hazFADBifunctional protein PutA/0.552
1tj1FADBifunctional protein PutA1.5.5.20.543
4nmdFDABifunctional protein PutA/0.538
5eaiFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.449
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.448
1uy8PU5Heat shock protein HSP 90-alpha/0.447
1uykPUXHeat shock protein HSP 90-alpha/0.447
1ia4TQ6Dihydrofolate reductase1.5.1.30.445
1ia3TQ5Dihydrofolate reductase1.5.1.30.443
2fwyH64Heat shock protein HSP 90-alpha/0.441
2jn3JN3Fatty acid-binding protein, liver/0.440
3gobHXXDdmC/0.440