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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4n82FMNRibonucleotide reductase (NrdI family protein), putative

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4n82FMNRibonucleotide reductase (NrdI family protein), putative/1.000
3f90FMNFlavodoxin/0.480
3qe2FMNNADPH--cytochrome P450 reductase/0.469
1amoFMNNADPH--cytochrome P450 reductase/0.467
3qfrFMNNADPH--cytochrome P450 reductase/0.456
3f6sFMNFlavodoxin/0.454
4exg916Beta-secretase 13.4.23.460.451
2bf4FMNNADPH--cytochrome P450 reductase/0.450
1ja1FMNNADPH--cytochrome P450 reductase/0.448
5dp2NAPCurF/0.448
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.447
2bn4FMNNADPH--cytochrome P450 reductase/0.446
3nsh957Beta-secretase 13.4.23.460.446
4i0i957Beta-secretase 13.4.23.460.446
5a4vQUEGlutathione S-transferase F22.5.1.180.442
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.441
4frkDWDBeta-secretase 13.4.23.460.441
2e9aB28Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.440