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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4mkb28VGenome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4mkb28VGenome polyprotein2.7.7.481.000
4mka2AYGenome polyprotein2.7.7.480.756
4mk928RGenome polyprotein2.7.7.480.593
3u4r08FGenome polyprotein2.7.7.480.591
3g86T18Genome polyprotein2.7.7.480.590
3br9DEYGenome polyprotein2.7.7.480.584
3bsc2PDGenome polyprotein2.7.7.480.576
3tyvHI3Genome polyprotein2.7.7.480.564
3igvB80Genome polyprotein2.7.7.480.557
3d28B34Genome polyprotein2.7.7.480.546
3hkwIX6Genome polyprotein2.7.7.480.545
2giqNN2Genome polyprotein2.7.7.480.543
3u4o08EGenome polyprotein2.7.7.480.531
3d5m4MSGenome polyprotein2.7.7.480.524
3gynB42Genome polyprotein2.7.7.480.521
3hkyIX6Genome polyprotein2.7.7.480.520
3h59H59Genome polyprotein2.7.7.480.511
3uph0C1Genome polyprotein2.7.7.480.511
3ska053Genome polyprotein2.7.7.480.506
3h2lYAKGenome polyprotein2.7.7.480.496
3csoXNIGenome polyprotein2.7.7.480.482
3ske054Genome polyprotein2.7.7.480.470
3gnvXNZGenome polyprotein2.7.7.480.457
2gc8885Polyprotein/0.448
2yoj8Y6Genome polyprotein2.7.7.480.446
4eaw0NQGenome polyprotein2.7.7.480.444