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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4mihFADPyranose 2-oxidase1.1.3.10

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4mihFADPyranose 2-oxidase1.1.3.101.000
2igoFADPyranose 2-oxidase/0.576
2ignFADPyranose 2-oxidase/0.556
3bg7FADPyranose 2-oxidase/0.537
3k4nFADPyranose 2-oxidase/0.495
4qi5FADCellobiose dehydrogenase/0.492
4qi4FADCellobiose dehydrogenase/0.482
4qi7FADCellobiose dehydrogenase/0.464
1cf3FADGlucose oxidase1.1.3.40.456
5hsaFASAlcohol oxidase 11.1.3.130.453
4udrFAD5-(hydroxymethyl)furfural oxidase/0.447
4u2lSFDCholesterol oxidase1.1.3.60.440