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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4m87NADEnoyl-[acyl-carrier-protein] reductase [NADH]

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4m87NADEnoyl-[acyl-carrier-protein] reductase [NADH]/1.000
4oxyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.623
4zjuNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.589
2wyvNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.588
5koiNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.559
2b37NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.542
1vrwNAIEnoyl-ACP reductase/0.528
4o1mNADEnoyl-acyl carrier reductase/0.521
4trnNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.516
2aqiNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.512
2aqkNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.510
2h9iEADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.503
2nq8ZIDEnoyl-ACP reductase/0.492
1v35NAIEnoyl-ACP reductase/0.491
2iebZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.491
2ie0ZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.487
4fw8NAI3-oxoacyl-(Acyl-carrier-protein) reductase/0.470
1pr9NAPL-xylulose reductase1.1.1.100.463
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.463
4nbtNAD3-oxoacyl-[acyl-carrier-protein] reductase/0.462
2wsbNADGalactitol dehydrogenase/0.461
4bkqNAIEnoyl-[acyl-carrier-protein] reductase [NADH]/0.460
2dteNAIGlucose 1-dehydrogenase related protein/0.457
4z3dNDPCarbonyl reductase [NADPH] 11.1.1.1840.457
5jlaNADPutative short-chain dehydrogenase/reductase/0.457
1kkq471Peroxisome proliferator-activated receptor alpha/0.454
3bhiNAPCarbonyl reductase [NADPH] 11.1.1.1840.454
4q71FADBifunctional protein PutA/0.446
2q2vNADBeta-D-hydroxybutyrate dehydrogenase/0.444
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.443
1w4zNAPPutative ketoacyl reductase1.3.10.442
3f1kNAPUncharacterized oxidoreductase YciK10.442
3uicNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.442
2ztmNADD(-)-3-hydroxybutyrate dehydrogenase/0.441
3qrwNDPPutative ketoacyl reductase1.3.10.441
5jsfNAD17-beta-hydroxysteroid dehydrogenase 141.1.10.441
1e3wNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.440