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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4m6p20RNicotinamide phosphoribosyltransferase2.4.2.12

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4m6p20RNicotinamide phosphoribosyltransferase2.4.2.121.000
4m6q20TNicotinamide phosphoribosyltransferase2.4.2.120.789
4kfp1R7Nicotinamide phosphoribosyltransferase2.4.2.120.629
4kfo1QSNicotinamide phosphoribosyltransferase2.4.2.120.611
4o281QSNicotinamide phosphoribosyltransferase2.4.2.120.611
4jr51LSNicotinamide phosphoribosyltransferase2.4.2.120.604
4lwwLWWNicotinamide phosphoribosyltransferase2.4.2.120.598
4lva20MNicotinamide phosphoribosyltransferase2.4.2.120.595
4kfn1QRNicotinamide phosphoribosyltransferase2.4.2.120.588
4jnm1LJNicotinamide phosphoribosyltransferase2.4.2.120.579
2gvjDGBNicotinamide phosphoribosyltransferase2.4.2.120.573
4ltsLTSNicotinamide phosphoribosyltransferase2.4.2.120.562
4o1dDGBNicotinamide phosphoribosyltransferase2.4.2.120.527
4lvb20NNicotinamide phosphoribosyltransferase2.4.2.120.474
3g8eIS1Nicotinamide phosphoribosyltransferase2.4.2.120.449