scPDB - Distribution of Binding site Similarity values of 4m48 entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4m48	21B	Sodium-dependent dopamine transporter

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
4m48	21B	Sodium-dependent dopamine transporter	/	1.000
4xp4	COC	Sodium-dependent dopamine transporter	/	0.547
4xp1	LDP	Sodium-dependent dopamine transporter	/	0.514
4mm9	FVX	Na(+):neurotransmitter symporter (Snf family)	/	0.497
4mmd	29E	Na(+):neurotransmitter symporter (Snf family)	/	0.485
4mm7	29J	Na(+):neurotransmitter symporter (Snf family)	/	0.484
4mmc	29J	Na(+):neurotransmitter symporter (Snf family)	/	0.475
4mm4	8PR	Na(+):neurotransmitter symporter (Snf family)	/	0.472
3v94	WYQ	Phosphodiesterase	/	0.458
2ea4	F79	Methionine aminopeptidase 2	/	0.448
3gjw	GJW	Poly [ADP-ribose] polymerase 1	2.4.2.30	0.447