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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4lva20MNicotinamide phosphoribosyltransferase2.4.2.12

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4lva20MNicotinamide phosphoribosyltransferase2.4.2.121.000
4kfn1QRNicotinamide phosphoribosyltransferase2.4.2.120.624
4kfo1QSNicotinamide phosphoribosyltransferase2.4.2.120.616
4ltsLTSNicotinamide phosphoribosyltransferase2.4.2.120.615
4kfp1R7Nicotinamide phosphoribosyltransferase2.4.2.120.613
4m6p20RNicotinamide phosphoribosyltransferase2.4.2.120.604
4lwwLWWNicotinamide phosphoribosyltransferase2.4.2.120.601
4o281QSNicotinamide phosphoribosyltransferase2.4.2.120.592
4jr51LSNicotinamide phosphoribosyltransferase2.4.2.120.586
2gvjDGBNicotinamide phosphoribosyltransferase2.4.2.120.567
4m6q20TNicotinamide phosphoribosyltransferase2.4.2.120.564
4jnm1LJNicotinamide phosphoribosyltransferase2.4.2.120.560
4o1dDGBNicotinamide phosphoribosyltransferase2.4.2.120.495
4lvb20NNicotinamide phosphoribosyltransferase2.4.2.120.479
3g8eIS1Nicotinamide phosphoribosyltransferase2.4.2.120.457
4o1bDGBNicotinamide phosphoribosyltransferase2.4.2.120.456