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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4l04NAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.42

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4l04NAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.421.000
4l06NAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.612
4kzoNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.582
4l03NAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.556
2cmvNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.544
2cmjNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.529
3inmNDPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.503
2qfxNDPIsocitrate dehydrogenase [NADP], mitochondrial1.1.1.420.461