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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4jyzATPGlutamine--tRNA ligase6.1.1.18

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4jyzATPGlutamine--tRNA ligase6.1.1.181.000
1qrtATPGlutamine--tRNA ligase6.1.1.180.635
4jxxATPGlutamine--tRNA ligase6.1.1.180.627
4jxzATPGlutamine--tRNA ligase6.1.1.180.622
1qrsATPGlutamine--tRNA ligase6.1.1.180.609
1qruATPGlutamine--tRNA ligase6.1.1.180.589
1gtrATPGlutamine--tRNA ligase6.1.1.180.582
2rd2QSIGlutamine--tRNA ligase6.1.1.180.582
1qtqQSIGlutamine--tRNA ligase6.1.1.180.575
1euyQSIGlutamine--tRNA ligase6.1.1.180.560
2re8GSUGlutamine--tRNA ligase6.1.1.180.558