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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4i2q1BTGag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4i2q1BTGag-Pol polyprotein2.7.7.491.000
3qlhT27Gag-Pol polyprotein2.7.7.490.597
2ze2T27Gag-Pol polyprotein2.7.7.490.590
3is9AC7Gag-Pol polyprotein2.7.7.490.562
3bgrT27Gag-Pol polyprotein2.7.7.490.547
4i2pG73Gag-Pol polyprotein2.7.7.490.547
4id5T27Gag-Pol polyprotein2.7.7.490.533
2zd1T27Gag-Pol polyprotein2.7.7.490.531
3m8qDJZGag-Pol polyprotein2.7.7.490.520
4ifvT27Gag-Pol polyprotein2.7.7.490.520
3ffi3OBGag-Pol polyprotein2.7.7.490.510
3irxUDRGag-Pol polyprotein2.7.7.490.506
3m8p65BGag-Pol polyprotein2.7.7.490.497
3nbpJGZGag-Pol polyprotein2.7.7.490.497
4ig3T27Gag-Pol polyprotein2.7.7.490.497
3mec65BGag-Pol polyprotein2.7.7.490.494
1c1bGCAGag-Pol polyprotein2.7.7.490.493
4kko1REGag-Pol polyprotein2.7.7.490.490
1s9eADBGag-Pol polyprotein2.7.7.490.489
3med65BGag-Pol polyprotein2.7.7.490.489
4g1qT27Gag-Pol polyprotein2.7.7.490.483
1tvrTB9Gag-Pol polyprotein2.7.7.490.472
3lamKRPGag-Pol polyprotein2.7.7.490.471
3megT27Gag-Pol polyprotein2.7.7.490.471
1tl3H20Gag-Pol polyprotein2.7.7.490.469
1hpzAAPGag-Pol polyprotein2.7.7.490.462
1rt4UC1Gag-Pol polyprotein2.7.7.490.462
4rw6494Gag-Pol polyprotein2.7.7.490.462
3meeT27Gag-Pol polyprotein2.7.7.490.459
3lanKBTGag-Pol polyprotein2.7.7.490.457
1s6qTPBGag-Pol polyprotein2.7.7.490.455
2vg7NNIGag-Pol polyprotein2.7.7.490.454
5cyqT27Gag-Pol polyprotein2.7.7.490.452
1tktH12Gag-Pol polyprotein2.7.7.490.450
1vruAAPGag-Pol polyprotein2.7.7.490.450
1tl1H18Gag-Pol polyprotein2.7.7.490.449
1rt2TNKGag-Pol polyprotein2.7.7.490.447
1hb3SCVIsopenicillin N synthase1.21.3.10.445
4ko0JLJGag-Pol polyprotein2.7.7.490.444
4kfbT27Gag-Pol polyprotein2.7.7.490.442
1eetBFUGag-Pol polyprotein2.7.7.490.441
2rf2MRXGag-Pol polyprotein2.7.7.490.440