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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4h03LARActin, alpha skeletal muscle

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4h03LARActin, alpha skeletal muscle/1.000
4h0yLARActin, alpha skeletal muscle/0.592
1rdwLARActin, alpha skeletal muscle/0.579
4b1uLABActin, alpha skeletal muscle/0.561
3buzLARActin, alpha skeletal muscle/0.550
4b1vLABActin, alpha skeletal muscle/0.548
2q0uLABActin, alpha skeletal muscle/0.536
2v51LABActin, alpha skeletal muscle/0.536
4gy2LARActin, alpha skeletal muscle/0.530
2v52LABActin, alpha skeletal muscle/0.517
1rfqLARActin, alpha skeletal muscle/0.509
1esvLARActin, alpha skeletal muscle/0.507
1sqkLARActin, alpha skeletal muscle/0.500
3sjhLARActin, alpha skeletal muscle/0.494
1ijjLARActin, alpha skeletal muscle/0.490
4h0tLARActin, alpha skeletal muscle/0.482