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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4fgcPQ0NADPH-dependent 7-cyano-7-deazaguanine reductase1.7.1.13

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4fgcPQ0NADPH-dependent 7-cyano-7-deazaguanine reductase1.7.1.131.000
3uxvGUNNADPH-dependent 7-cyano-7-deazaguanine reductase/0.477
4b144XBGlycylpeptide N-tetradecanoyltransferase/0.452
2pauD5M5'-deoxynucleotidase YfbR/0.451
4zowCLMMultidrug transporter MdfA/0.448
4kp61S1cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.447
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.446
1x2hLPALipoate-protein ligase A6.3.1.200.445
4lxjLANLanosterol 14-alpha demethylase1.14.13.700.444
2przOMPOrotate phosphoribosyltransferase 12.4.2.100.443
1fmjRTLRetinol dehydratase/0.440