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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4eaw0NQGenome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4eaw0NQGenome polyprotein2.7.7.481.000
3h59H59Genome polyprotein2.7.7.480.607
3igvB80Genome polyprotein2.7.7.480.605
3d5m4MSGenome polyprotein2.7.7.480.601
3hkyIX6Genome polyprotein2.7.7.480.583
3tyvHI3Genome polyprotein2.7.7.480.577
4mk928RGenome polyprotein2.7.7.480.575
3g86T18Genome polyprotein2.7.7.480.567
3h2lYAKGenome polyprotein2.7.7.480.564
3hkwIX6Genome polyprotein2.7.7.480.556
3ska053Genome polyprotein2.7.7.480.554
3uph0C1Genome polyprotein2.7.7.480.550
4mka2AYGenome polyprotein2.7.7.480.546
2giqNN2Genome polyprotein2.7.7.480.544
3u4r08FGenome polyprotein2.7.7.480.544
3csoXNIGenome polyprotein2.7.7.480.542
3u4o08EGenome polyprotein2.7.7.480.542
3d28B34Genome polyprotein2.7.7.480.533
3br9DEYGenome polyprotein2.7.7.480.525
3gnvXNZGenome polyprotein2.7.7.480.523
3bsc2PDGenome polyprotein2.7.7.480.521
3gynB42Genome polyprotein2.7.7.480.519
4mkb28VGenome polyprotein2.7.7.480.518
2yoj8Y6Genome polyprotein2.7.7.480.516
3ske054Genome polyprotein2.7.7.480.502
4mk728OGenome polyprotein2.7.7.480.502
2gc8885Polyprotein/0.494
3upi0C2Genome polyprotein2.7.7.480.470
3bsa1PDGenome polyprotein2.7.7.480.468
3co93MSGenome polyprotein2.7.7.480.452
3h5uH5UGenome polyprotein2.7.7.480.449
4ih71ERGenome polyprotein2.7.7.480.440