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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4e7r0NWProthrombin3.4.21.5

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4e7r0NWProthrombin3.4.21.51.000
1c4yIH3Prothrombin3.4.21.50.534
1w7gMIUProthrombin3.4.21.50.533
1ypjUIBProthrombin3.4.21.50.528
1d4pBPPProthrombin3.4.21.50.527
2v3oI26Prothrombin3.4.21.50.526
4ayy9MXProthrombin3.4.21.50.523
2cf9348Prothrombin3.4.21.50.515
1ypeUIPProthrombin3.4.21.50.507
1ypgUIRProthrombin3.4.21.50.507
1riwOSCProthrombin3.4.21.50.503
2cf8ESHProthrombin3.4.21.50.498
4hfp15UProthrombin3.4.21.50.497
1zgi382Prothrombin3.4.21.50.496
4ax9N5NProthrombin3.4.21.50.492
1mueCDDProthrombin3.4.21.50.491
2jh5895Prothrombin3.4.21.50.491
1d3pBT3Prothrombin3.4.21.50.490
1oytFSNProthrombin3.4.21.50.489
1d6w00RProthrombin3.4.21.50.488
1jwtBLIProthrombin3.4.21.50.487
1k21IGNProthrombin3.4.21.50.487
3hatGLY_VAL_ARG_RNGProthrombin3.4.21.50.485
1yplRA8Prothrombin3.4.21.50.484
2jh6894Prothrombin3.4.21.50.484
1k22MELProthrombin3.4.21.50.483
2zfq45UProthrombin3.4.21.50.482
2zfr46UProthrombin3.4.21.50.481
4lxb7R9Prothrombin3.4.21.50.481
1nzq162Prothrombin3.4.21.50.480
3c1kT15Prothrombin3.4.21.50.480
1c4uIH1Prothrombin3.4.21.50.477
4ayv9MQProthrombin3.4.21.50.477
2gdeSN3Prothrombin3.4.21.50.476
1afeALZProthrombin3.4.21.50.474
7kmeACE_0BN_CHG_PRRProthrombin3.4.21.50.474
2bvs2CEProthrombin3.4.21.50.470
2cn0F25Prothrombin3.4.21.50.470
5cmx0G6Prothrombin3.4.21.50.470
1ta6177Prothrombin3.4.21.50.467
1t4v14AProthrombin3.4.21.50.466
1t4u81AProthrombin3.4.21.50.464
1xm1GAHProthrombin3.4.21.50.463
2zi224UProthrombin3.4.21.50.462
1vzqSHYProthrombin3.4.21.50.460
1zgv501Prothrombin3.4.21.50.460
2r2mI50Prothrombin3.4.21.50.460
1a4wQWEProthrombin3.4.21.50.459
1mu6CDAProthrombin3.4.21.50.457
2uuk897Prothrombin3.4.21.50.457
4rn615UProthrombin3.4.21.50.457
1ypkCCRProthrombin3.4.21.50.456
1z71L17Prothrombin3.4.21.50.456
2jh0701Prothrombin3.4.21.50.456
2zc922UProthrombin3.4.21.50.456
2anmCDOProthrombin3.4.21.50.454
1sb1165Prothrombin3.4.21.50.453
1ypmRA4Prothrombin3.4.21.50.452
2bdyUNBProthrombin3.4.21.50.452
1ae8AZLProthrombin3.4.21.50.451
2zhe13UProthrombin3.4.21.50.450
1nm6L86Prothrombin3.4.21.50.449
1gj5130Prothrombin3.4.21.50.448
2zgx29UProthrombin3.4.21.50.448
2zhw12UProthrombin3.4.21.50.445
1d9i00PProthrombin3.4.21.50.443
2zda32UProthrombin3.4.21.50.443
3eq02TSProthrombin3.4.21.50.443
2zgb21UProthrombin3.4.21.50.441
2zhf49UProthrombin3.4.21.50.441
4bakM67Prothrombin3.4.21.50.440