scPDB - Distribution of Binding site Similarity values of 4dxl entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4dxl	C5P	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
4dxl	C5P	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	/	1.000
4emd	C5P	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	/	0.616
2v8p	CDP	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	/	0.563
2v2z	CDM	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	/	0.543
2v2q	NVG	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	/	0.527
2v34	CTN	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	/	0.510
2v2v	V12	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	/	0.488
3g4k	ROL	cAMP-specific 3',5'-cyclic phosphodiesterase 4D	3.1.4.53	0.442