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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4c04SFGProtein arginine N-methyltransferase 6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4c04SFGProtein arginine N-methyltransferase 6/1.000
4qppSAHProtein arginine N-methyltransferase 6/0.555
4c05SAHProtein arginine N-methyltransferase 6/0.506
4m37SAHProtein arginine N-methyltransferase 72.1.10.487
1oriSAHProtein arginine N-methyltransferase 1/0.457
1t0lNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.454
1e5qNDPSaccharopine dehydrogenase [NADP(+), L-glutamate-forming]1.5.1.100.450
2q0lFADThioredoxin reductase1.8.1.90.447
5e8jSAHmRNA cap guanine-N7 methyltransferase2.1.1.560.445
2gnaGDUUDP-N-acetylglucosamine 4,6-dehydratase (inverting)4.2.1.1150.444
2vouFAD2,6-dihydroxypyridine 3-monooxygenase1.14.13.100.442
4q71FADBifunctional protein PutA/0.442
3b3fSAHHistone-arginine methyltransferase CARM1/0.441