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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4afhL0BAchbp

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4afhL0BAchbp/1.000
4afgQMRAchbp/0.490
4b5dSW4Achbp/0.467
3uoyFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.456
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.453
5dqrFAD7-hydroxymethyl chlorophyll a reductase, chloroplastic1.17.7.20.451
3b8xG4MPutative pyridoxamine 5-phosphate-dependent dehydrase/0.450
4o1mNADEnoyl-acyl carrier reductase/0.449
4wriOKAOkadaic acid binding protein 2-alpha/0.446
2xukTZ5Acetylcholinesterase3.1.1.70.440