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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3zcbATPAdenosine monophosphate-protein transferase VbhT2.7.7.n1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3zcbATPAdenosine monophosphate-protein transferase VbhT2.7.7.n11.000
2f3rG5PGuanylate kinase2.7.4.80.459
3zlmANPAdenosine monophosphate-protein transferase NmFic2.7.7.n10.453
4cvmANPUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase/0.446
1a2nTETUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.445
1tqf32PBeta-secretase 13.4.23.460.445
4n3l2FNProthrombin3.4.21.50.444
2gjlFMNNitronate monooxygenase1.13.12.160.440
3u9eCOALmo1369 protein/0.440
3vx4ATPPutative ABC transporter, ATP-binding protein ComA/0.440