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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3w0nANPHygromycin-B 4-O-kinase2.7.1.163

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
3w0nANPHygromycin-B 4-O-kinase2.7.1.1631.000
3w0sANPHygromycin-B 4-O-kinase2.7.1.1630.625
3w0pADPHygromycin-B 4-O-kinase2.7.1.1630.559
2oh02PYcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.472
2ww4ADP4-diphosphocytidyl-2-C-methyl-D-erythritol kinase2.7.1.1480.459
4fg7ATPCalcium/calmodulin-dependent protein kinase type 12.7.11.170.459
2jdsL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.457
1ydtIQBcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.456
4o0rX4ZSerine/threonine-protein kinase PAK 12.7.11.10.450
2uzuL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.449
4xwtU5PRibonuclease J/0.448
1zp9ATPRIO-type serine/threonine-protein kinase Rio12.7.11.10.447
4ge70K5Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.447
1rfvADPPyridoxal kinase2.7.1.350.446
4j95ACPFibroblast growth factor receptor 2/0.446
4y95746Tyrosine-protein kinase/0.444
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.443
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.442
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.440
3q4zANPSerine/threonine-protein kinase PAK 12.7.11.10.440