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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3vy5FMNFMN-binding protein

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3vy5FMNFMN-binding protein/1.000
3a20FMNFMN-binding protein/0.712
2e83FMNFMN-binding protein/0.706
3a6rFMNFMN-binding protein/0.691
3a6qFMNFMN-binding protein/0.663
1flmFMNFMN-binding protein/0.653
3awhFMNFMN-binding protein/0.650
3vy2FMNFMN-binding protein/0.636
3amfFMNFMN-binding protein/0.602
1wlkFMNFMN-binding protein/0.535
1wliFMNFMN-binding protein/0.526
2nq8ZIDEnoyl-ACP reductase/0.477
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.474
3bnkFMNFlavoredoxin/0.469
3pqbVGPPutative oxidoreductase/0.457
4o1mNADEnoyl-acyl carrier reductase/0.453
3iw1ASDSteroid C26-monooxygenase1.14.13.1410.450
1e3eNAIAlcohol dehydrogenase 41.1.1.10.448
1rv1IMZE3 ubiquitin-protein ligase Mdm26.3.20.447
2wyvNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.446
3t8vBTJM1 family aminopeptidase3.4.110.446
4z61ILE_THR_GLN_TYS_TYSPhytosulfokine receptor 12.7.11.10.446
1dgmADNAdenosine kinase2.7.1.200.443
2ikuLIYRenin3.4.23.150.442
3oqfS51Renin3.4.23.150.442
4gh6LUOHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.442
1xe55FEPlasmepsin-23.4.23.390.441
2gjlFMNNitronate monooxygenase1.13.12.160.441
1hfqMOTDihydrofolate reductase1.5.1.30.440