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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3vsxR32Renin3.4.23.15

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3vsxR32Renin3.4.23.151.000
3vswR31Renin3.4.23.150.677
3vyfVYFRenin3.4.23.150.653
3vydVYDRenin3.4.23.150.636
3vyeVYERenin3.4.23.150.582
3own3OXRenin3.4.23.150.578
3vucHHERenin3.4.23.150.577
2g20L1ARenin3.4.23.150.571
1rneC60Renin3.4.23.150.570
3own3OWRenin3.4.23.150.560
1bim0QBRenin3.4.23.150.553
1bil0IURenin3.4.23.150.550
2v16C47Renin3.4.23.150.543
3d91REMRenin3.4.23.150.532
2v13C40Renin3.4.23.150.526
2i4qUA4Renin3.4.23.150.519
2g1o2IGRenin3.4.23.150.511
2g1s4IGRenin3.4.23.150.491
2g1y5IGRenin3.4.23.150.491
2g1r3IGRenin3.4.23.150.489
2g247IGRenin3.4.23.150.481
3oqkS52Renin3.4.23.150.479
2g226IGRenin3.4.23.150.478
2g21L1BRenin3.4.23.150.477
3oqfS51Renin3.4.23.150.474
2ikuLIYRenin3.4.23.150.473
2fs4PZ1Renin3.4.23.150.469
2il2LIXRenin3.4.23.150.466
3oadLPORenin3.4.23.150.460
3g6zA7TRenin3.4.23.150.458
3g72A6TRenin3.4.23.150.457
2g263LGRenin3.4.23.150.456
3g70A5TRenin3.4.23.150.448
2iko7IGRenin3.4.23.150.447