Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3vg9ZMAAdenosine receptor A2a

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3vg9ZMAAdenosine receptor A2a/1.000
5k2bZMAAdenosine receptor A2a/0.560
5uviZMAAdenosine receptor A2a/0.550
5k2cZMAAdenosine receptor A2a/0.513
5k2dZMAAdenosine receptor A2a/0.510
3emlZMAAdenosine receptor A2a/0.507
5iua6DXAdenosine receptor A2a/0.497
5k2aZMAAdenosine receptor A2a/0.495
5jtbZMAAdenosine receptor A2a/0.486
4eiyZMAAdenosine receptor A2a/0.480
5iu86DZAdenosine receptor A2a/0.479
5iubCLRAdenosine receptor A2a/0.451
3qakUKAAdenosine receptor A2a/0.445
5g53NECAdenosine receptor A2a/0.443
5iu4ZMAAdenosine receptor A2a/0.441
3ufvHW9Nitric oxide synthase, brain1.14.13.390.440
4cx4HW9Nitric oxide synthase, brain1.14.13.390.440