Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3vey0H5Glucokinase2.7.1.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3vey0H5Glucokinase2.7.1.21.000
4mleVO1Glucokinase2.7.1.20.690
3fr0AJBGlucokinase2.7.1.20.563
3h1vTK1Glucokinase2.7.1.20.560
3id8MRKGlucokinase2.7.1.20.534
4mlhVO2Glucokinase2.7.1.20.532
3a0iAJIGlucokinase2.7.1.20.523
3f9mMRKGlucokinase2.7.1.20.521
1v4sMRKGlucokinase2.7.1.20.510
3vev0H4Glucokinase2.7.1.20.502
4l3q926Glucokinase2.7.1.20.463
2znoS44Peroxisome proliferator-activated receptor gamma/0.455
2npaMMBPeroxisome proliferator-activated receptor alpha/0.450
3nx4NAPPutative oxidoreductase/0.447
4hfmNAP2-alkenal reductase (NADP(+)-dependent)/0.446
2znnS44Peroxisome proliferator-activated receptor alpha/0.444
3imxB84Glucokinase2.7.1.20.443
2uxoTACHTH-type transcriptional regulator TtgR/0.442