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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3v4tUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3v4tUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/1.000
3swqEPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.663
1q3gUDAUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.607
1rywEPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.603
3issEPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.574
2rl1UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.573
4r7uUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.563
3vcyUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.558
3upkUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.555
2yvwEPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.535
1a2nTETUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.512
3kqjUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.507
2rl2UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.503
1uaeUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.486
3kr6UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.474
3lthUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.453