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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3uj8SFGPhosphoethanolamine N-methyltransferase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3uj8SFGPhosphoethanolamine N-methyltransferase/1.000
3uj7SAMPhosphoethanolamine N-methyltransferase/0.653
4iv0SAMPhosphoethanolamine N-methyltransferase, putative/0.605
4mwzSAMPhosphoethanolamine N-methyltransferase, putative/0.589
4fgzSAHPhosphoethanolamine N-methyltransferase/0.588
4r6xSAHPhosphoethanolamine N-methyltransferase/0.585
4iv8SAMPhosphoethanolamine N-methyltransferase,putative/0.539
5je4SAHMethyl transferase/0.483
5epeSAHUncharacterized protein/0.477
1qanSAHrRNA adenine N-6-methyltransferase2.1.1.1840.474
5icfSAH(S)-norcoclaurine 6-O-methyltransferase/0.473
5je3SAHMethyl transferase/0.472
5bp7SAHSAM-dependent methyltransferase/0.469
1ve3SAMUncharacterized protein/0.465
3bgvSAHmRNA cap guanine-N7 methyltransferase2.1.1.560.461
2z1mNDPGDP-mannose 4,6-dehydratase/0.460
4krhSAMPhosphoethanolamine N-methyltransferase 2/0.460
2ylzFADPhenylacetone monooxygenase1.14.13.920.457
3ha7B32Hydroxymycolate synthase MmaA42.1.10.457
4qtuSAM18S rRNA (guanine(1575)-N(7))-methyltransferase/0.456
3ha5SFGHydroxymycolate synthase MmaA42.1.10.453
3pb3SAH16S rRNA (adenine(1408)-N(1))-methyltransferase2.1.1.1800.452
3hbbNAPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.451
3jskAHZThiamine thiazole synthase/0.451
1qaqSFGrRNA adenine N-6-methyltransferase2.1.1.1840.449
3p9kSAHCaffeic acid O-methyltransferase/0.449
5je2SAHMethyl transferase/0.446
1w4xFADPhenylacetone monooxygenase1.14.13.920.445
5bw4SAMUncharacterized protein/0.445
2xviFADPutative flavin-containing monooxygenase/0.440
3ha3SAHHydroxymycolate synthase MmaA42.1.10.440
5e8jSAHmRNA cap guanine-N7 methyltransferase2.1.1.560.440